Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MADEIAKAQVARPGGDTIFGKIIRKEIPAKIIFEDDRCLAFHDISPQAPTHFLVIPKKHISQISVAEDDDESLLGHLMIVGKKCAADLGLNKGYRMVVNEGSDGGQSVYHVHLHVLGGR------QMHWPPG
3R6F Chain:A ((6-114))
--------------EGCIFCTLYRKGA--NIIYETDRLFALIDRYPLSKGHFLVIPKAHHPYLHNYKPE---ELSGVLDTIRHLVQKFGFE-RYNILQNNG--NHQEVFHVHFHVIPFVSADERLMINWKA-
General information:
TITO was launched using:
RESULT:
Template:
3R6F.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -69176 for 668 contacts (-103.6/contact) +
2D Compatibility (PS) -11228 + (NN) -6810 + (LL) 972
1D Compatibility (HY) -9600 + (ID) 1650
Total energy: -97492.0 ( -145.95 by residue)
QMean score : 0.393
(partial model without unconserved sides chains):
PDB file :
Tito_3R6F.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R6F-query.scw
PDB file :
Tito_Scwrl_3R6F.pdb
: