Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVW-------GTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGS--SLGINFLYAATHELGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK
1RM8 Chain:A ((2-169))
-------QKWQHKHITYSIKNVTPKVGDPETRKAIRRAFDVWQNVTPLTFEEVPYSELENGKRDVDITIIFASGFHGDSSPFDGEGGFLAHAYFPGPGIGGDTHFDSDEPWTLGNPNHDGNDLFLVAVHELGHALGLEHSNDPTAIMAPFYQYMETDNFKLPNDDLQGIQKIYGP-------
General information:
TITO was launched using:
RESULT:
Template:
1RM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72404 for 1218 contacts (-59.4/contact) +
2D Compatibility (PS) -17600 + (NN) -14187 + (LL) 316
1D Compatibility (HY) -10400 + (ID) 3750
Total energy: -118025.0 ( -96.90 by residue)
QMean score : 0.807
(partial model without unconserved sides chains):
PDB file :
Tito_1RM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RM8-query.scw
PDB file :
Tito_Scwrl_1RM8.pdb
: