Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGNSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
2CVD Chain:D ((1-198))
-PNYKLTYFNMRGRAEIIRYIFAYLDIQYEDHRIEQADWPEIKSTLPFGKIPILEVDGLTLHQSLAIARYLTKNTDLAGNTEMEQCHVDAIVDTLDDFMSCFPWAEKKQDVKEQMFNELLTYNAPHLMQDLDTYLGGREWLIGMSVTWADFYWEICSTTLLVFKPDLLDNHPRLVTLRKKVQAIPAVANWIKRRPQTKL
General information:
TITO was launched using:
RESULT:
Template:
2CVD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130747 for 1424 contacts (-91.8/contact) +
2D Compatibility (PS) -21153 + (NN) -9168 + (LL) 208
1D Compatibility (HY) -30800 + (ID) 9850
Total energy: -201510.0 ( -141.51 by residue)
QMean score : 0.767
(partial model without unconserved sides chains):
PDB file :
Tito_2CVD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CVD-query.scw
PDB file :
Tito_Scwrl_2CVD.pdb
: