Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSSQVVGIEPLYIKAEPASPDSPKGSSETETEPPVALAPGPAPTRCLPGHKEEEDGEGAGPGEQGGGKLVLSSLPKRLCLVCGDVASGYHYGVASCEACKAFFKRTIQ--GSIEYSCPASNECEITKRRRKACQACRFTKCLRVGMLKEGV------RLDRVRGGRQKYKRRPEVDPL---------PFPGPFPAGPLAVAGGP---------RKTAAPVNALVSHLLVVEPEKLYAMP---------DPAGPDGHLPAVATLCDLFDREIVVTISWAKSIPGFSSLSLSDQMSVLQSVWMEVLVLGVAQRSLPLQDELAFAEDLVLDEEGARAAGL-GELGAALLQLVRRLQALRLEREEYVLLKALALANSDSVHIEDAEAVEQLREALHEALLEYEAGRAGPGGGAERRRAGRLLLTLPLLRQTAGKVLAHFYGVKLEGKVPMHKLFLEMLEAMMD- |
4NQA Chain:I ((5-389)) | --------------------------------------KGPAPKM----------------------------LGHELCRVCGDKASGFHYNVLSCEGCKGFFRRSVVRGGARRYACRGGGTCQMDAFMRRKCQQCRLRKCKEAGMREQCVLSEEQIRKKKIRKQQQQESQSQSQSPVGPQGSSSSASGPGASPGGSEAGSQGSGEGEGVQLTAAQELMIQQLVAAQLQCNKRSFSDQPKVTPWPLGADPQSRDARQQRFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRYNHETECITFLKDFTYSKDDFHRAGLQVEFINPIFEFSRAMRRLGLDDAEYALLIAINIFSADRPNVQEPGRVEALQQPYVEALLSYTRIKRPQ----DQLRFPRMLMKLVSLRTLSSVHSEQVFALRLQDKK-----LPPLLSEIWDV |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4NQA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -148557 for 2317 contacts (-64.1/contact) +
2D Compatibility (PS) -37557 + (NN) -27193 + (LL) 1580
1D Compatibility (HY) -19600 + (ID) 5200
Total energy: -236527.0 ( -102.08 by residue)
QMean score : 0.489
|
|
|