Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ------------MGNCLHRAELSPSTENSSQLDFEDVWNSSYGVND-----SFPDGDYGANLEAAAPCHSCNLLDDSALPFFILTSVLGILASSTVLFMLFRPLFRWQLCPGW--------------------PVLAQLAVGSALFSIVVPVLAPGLGSTRSSALCSLGYCVWYGSAFAQALLLGCHASLGHRLGAGQV------PGLTLGLTVGIWGVAALLTLPV------------TLASGASGGLCTLIYST----------ELKALQATHTVACLAIFVLLPLGLFGAKGLKKALGMGPGPWMNILWAWFIFWWPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEAL-------AILHCVATPLLLALFCHQATRTLLPSLPLPEGWSSHLDTLGSKS |
4K90 Chain:A ((1-389)) | ADYQVYAWGINDPTEGERTVIKDPWDSVASEFTWISDGSTNYTTSRGNNGIAQSNPSGGPSYLNNYRPSSSSLSFKYPYSVSSSPPSSYIDASIIQLFYTANIYHDLLYTLGFTEKAGNFEYNTNGQGGLGNDYVILNAQDGSGTNNANFATPPDGQPGRMRMYVWTESTPYRDGSFEAGIVIHEYTHGLSNRLTGGPANSNCLNALESGGMGEGWSDFMATAIRLKPGDKRSTDYTMGEWASNRAGGIRQYPYSTSLSTNPLTYTSVNSLNAVHAIGTVWASMLYEVLW----NLIDKHGKNDAPKPTLRDGVP----TDGKYLAMKLVMDGMALQPCNPNFVQARDAILDADTALTGGENQCEIWTAFAK-RGLGAGAKYSSRNRVGSTEVPSGVC---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K90.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -286375 for 2554 contacts (-112.1/contact) +
2D Compatibility (PS) -32882 + (NN) -9144 + (LL) 856
1D Compatibility (HY) 6000 + (ID) 2800
Total energy: -324345.0 ( -126.99 by residue)
QMean score : 0.321
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