Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDPTVPV-FGTKLTPINGREETPCY---------NQTLSFTVLTCIISLVGLTGNAVVLWLLG-YRMRRNAVSIYILNLAAADFLFLS----FQIIRLPLRLINISHLIRKILVSVMTFPYFTGLSMLSAISTERCLSVLWPIW-YRCRRPTHLSAVVCVLLWGLSLLFSMLEWRFCDFLFSGADSS-----WCETSDFIPVAWLIFLCVVLCVSSLVLLVRILC----------------GSRKMPLTRLYVTILLTVLVFLLCGLPFGILGALIYRMH-LNLEVLYCHVYLVCMSLSSLNSSANPIIYFFVGSFRQRQNRQNLKLVLQRALQDKPEVDKGEGQLPEESLELSGSRLGP |
1U19 Chain:A ((4-349)) | MNGTEGPNFYVPFSNKTGVVRSPFEAPQYYLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFTWVMALACAAPPL-VGWSRYIPEGMQCSCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAV---YNPVIYIMM-------NKQFRNCMVTTLCCGKNPLGDDEASTTVSKTETSQVAPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U19.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -253360 for 2413 contacts (-105.0/contact) +
2D Compatibility (PS) -30953 + (NN) -4793 + (LL) 516
1D Compatibility (HY) -7600 + (ID) 950
Total energy: -297140.0 ( -123.14 by residue)
QMean score : 0.190
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