Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MPTFNGSVFMPSAFILIGIPGLESVQCWIGIPFSAMYLIGVIGNSLILVIIKYENSLHIPMYIFLAMLAATDIALNTCILPKMLGIFWFHLP-EISFDACLFQMWLIHSFQAIESGILLAMALDRYVAICIPLRHATIFSQQFLTHIGLGVTLRAAILIIPSLGL----------IKC----------CLKHYRTTVISHSYCEHMAIVKLATEDIRVNKIYGLFVAFAIL------------------GFDIIFITLSYVQIFITVFQLPQKEARFKAFNTCIAHICVFLQ----FYLLAFFSFFTHR---------FGSHIPPYIHILLSNLYLLVPPFLNPIVYGVKTKQIRDHIVKVFFFKKVT |
4XNV Chain:A ((38-382)) | --SFKCA-----------LTKTGFQFYYLPAVYILVFIIGFLGNSVAIWMFVFHMKPWSGISVYMFNLALADF-LYVLTLPALIFYYFNKTDWIFGDAMCKLQRFIFHVNLYGSILFLTCISAHRYSGVVYP-KSLGRLKKKNAICISVLVWLIVVVAISPILFYSGTGVRKNKTITCYDTTSDEYLRSYFIYSMCTTVAMFCVPLVLILGCYGLIVRALIYKMKKYTCTVCGYIYNPEDGDPDNGVNPGTDFKDIVCPLCGVGKDQFEEVEEPLRRKSIYLVIIVLTVFAVSYIPFHVMKTMNLRARLDFQTPAMCAFNDRVYATYQVTRGLASLNS--CVNPILYFLAGDTFRRR----------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4XNV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -241387 for 2050 contacts (-117.7/contact) +
2D Compatibility (PS) -29121 + (NN) -2962 + (LL) 2580
1D Compatibility (HY) -18000 + (ID) 2450
Total energy: -291340.0 ( -142.12 by residue)
QMean score : 0.244
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