Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSLINPKVSAMFFDQIVTATDHNIAWEKIQNLLYNLYGEATYNSWLSSLKFVSSSNGEVLLSVPTRFIKEWITVHYMEKILLLWQNEDKSICSIDIQVTEEKNSSSSIISKNKEESVNNLGSPLDPRFTFDNFVVGKPNELAFTAAKRVAESIDPIPGSNPLFLYGGVGLGKTHLMHAIAWHIVNSPSAKRKVVYLSAEKFMYQ-------Y----ITALR--SKD----IMLFK----EQFRSVDVLMVDDVQFISGKDSTQEEFFHTFNALIDQNKQLVISADRSPSDLDGVEERIKSRLGWGLVADINETTFELRLGILQAKVEQMNMYVP-QDVLEFLARNIRSNIRELEGALNKV-AHTSLIGRSMTVESASETLMDLLRSNHRSITIAEIQKKIAEFFNIKVTDMHSNRRLRSLVRPRQIAMYFAKKFTHKSLPDIGRSFGGRDHATVIHAVKQIENFIKTDSEFADEINQLRKMFK |
| 1SXJ Chain:E ((12-245)) | --------------------------------------------------------------------------------------------------------------------------------SLNALSHN---EELTNFLKSLSDQ---PRDLPHLLLYGPNGTGKKTRCMALLESIFGP---GVYR-----------NVVSSPYHLEITPS---NDRIVIQELLKEVAQMEQ----RYKCVIINEANSLTKD--AQAALRRTMEKYSK-NIRLIMVCDSM----SPIIAPIKSQCL---LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNELALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCLD--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1SXJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -94709 for 1257 contacts (-75.3/contact) +
2D Compatibility (PS) -19012 + (NN) -8333 + (LL) 11960
1D Compatibility (HY) -6000 + (ID) 1400
Total energy: -117494.0 ( -93.47 by residue)
QMean score : 0.474
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