Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNRLIMNLVTKSAINFTAPAVLPNGEIVDDFCLSEHIKGKYAILLFYPLDFTFVCPTELISLNNRISEFAKRDVEVIGISVDSKFSHYQWRKTSVSNGGIGEISYTLVSDIKKSISRDYGVLYDDS-IALRATFVIDDKFIVRHQSINDMPLGRNMDEFIRIVDAIKHNEEHGEVCPAGWKKGKPAMQASDEGVTDYLNSYSEEL
3TJF Chain:D ((64-251))
--------ISKPAPYWEGTAVI-DGEF-KELKLTDY-RGKYLVFFFYPLDFTFVCPTEIIAFGDRLEEFRSINTEVVACSVDSQFTHLAWINTPRRQGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGSETIIPDPAGKLKYFD------
General information:
TITO was launched using:
RESULT:
Template:
3TJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -109846 for 1406 contacts (-78.1/contact) +
2D Compatibility (PS) -19838 + (NN) -2297 + (LL) 1588
1D Compatibility (HY) -21200 + (ID) 4200
Total energy: -155793.0 ( -110.81 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_3TJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TJF-query.scw
PDB file :
Tito_Scwrl_3TJF.pdb
: