Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGASGGFDFSQGFGSAGDFSDIFNDFFGGEFGSSSRSKAKRSTTGVPGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDMCQGRGSEGATKPVQCHTCQGSGRIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCNGSGRRRDEVNISVSIPKGIEEGAKVRVSGKGEAGAKGGKSGDLYVYVKITPHKIFTRNKADLHCKVPIRMTLAVLGGEIDVQSIDGAKIKVKVPEGTQTSTKLRCKEKGMPYMNSYARGDLYVQIIVETLNPNNLTKKQIELLKALEEEENASIQQQSEGFFSKVKKK |
| 3LZ8 Chain:A ((113-294)) | -------------------------------------------------------------------------------------------------------------------AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN--VF-----------------G-------------------------------------IESETPKTLNVKIPAGVVDGQRIRLKGQGTPG---GPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPGSQAGQRLRIKGKGLVSKT--HTGDLFAVIKIVM--PTKPDEKARELWQQLAAAEASFDPRKTW--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LZ8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81463 for 1120 contacts (-72.7/contact) +
2D Compatibility (PS) -19282 + (NN) -3629 + (LL) 7464
1D Compatibility (HY) -12400 + (ID) 2600
Total energy: -111910.0 ( -99.92 by residue)
QMean score : 0.560
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