Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFDDKILLITGGTGSFGNAVMKRFLDSNIKEIRIFSRDEKKQDDIRKKYN------NSKLKFYIGDVRDSQ--SVETAMRDVDYVFHAAALKQVPSCEFFP---VEAVKTNIIGTENVLQSAIHQNVKKVICLSTDKAAYPINAMGISKAMMEKVFVAKSRNIRSEQTLICGTRYGNVMASRGSVIPLFIDKIKAGEPLTITDPDMTRFLMSLEDAVELVVHAFKHAETGDIM--VQKAP--SSTVGDLATALLELFEAD----------------------NAIEIIG-TRHGEKKAETLLTREEYAQCEDMGDYFRVPADSRD-LNYSNYVETGNEKITQSYEYNSDNTHILTVEEIKEKLLT--LEYVRNELNDYKASMR |
| 3PVZ Chain:A ((32-386)) | VVSQSRFLVLGGAGSIGQAVTKEIFKRNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQTFALDIGSIEYDAFIKADGQYDYVLNLSALKHVR-SEKDPFTLMRMIDVNVFNTDKTIQQSIDAGAKKYFCVSTDKAANPVNMMGASKRIMEMFLMRKS-----EEIAISTARFANVAFSDGSLLHGFNQRIQKNQPI-VAPNDIKRYFVTPQESGELCLMSCIFGENRDIFFPKLSEALHLISFADIAVKYLKQLGYEPHLCESEDEARELAKTLPAQGKWPCLFTSS---------EFFTDKETLDMARFDNLGIIKNDSLYQQELLELFEQ--------KIGQMKTDRQWTKEEIVQLFFIMIPDF------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PVZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -133448 for 2361 contacts (-56.5/contact) +
2D Compatibility (PS) -32098 + (NN) -10787 + (LL) 2004
1D Compatibility (HY) -20000 + (ID) 3800
Total energy: -198129.0 ( -83.92 by residue)
QMean score : 0.444
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