Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKRPKRILATIIIFLSLLFTIIYIDDIQKWFNQYTDKLTQNHKGQGHSKWEDFFRGSRITETFGKYQHS--PFDGKHYGIDFALPKGT----PIKAPTNGKVTRIFNNELGGKVLQIAEDNGEYHQWYLHLDKY-NVKVGDRVKAGDIIAYSGNTGKQ---TTG---AHLHFQRMKGGVGNAYAEDPKPFIEQLPD-GERSLYDL
3NYY Chain:A ((106-250))
----------------------------------------------------------KISYVDSWMFERNYGGKRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGITAPTG-AYFYYAHLDSYAELEKGDPVKAGDLLGYMGDSGYGEEGTTGEFPVHLHLGIYLKEGTEEISVNPYPVLRYAENARIKCVY--
General information:
TITO was launched using:
RESULT:
Template:
3NYY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -11830 for 918 contacts (-12.9/contact) +
2D Compatibility (PS) -13826 + (NN) -2807 + (LL) 4636
1D Compatibility (HY) -4000 + (ID) 2000
Total energy: -29827.0 ( -32.49 by residue)
QMean score : 0.478
(partial model without unconserved sides chains):
PDB file :
Tito_3NYY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NYY-query.scw
PDB file :
Tito_Scwrl_3NYY.pdb
: