Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKTKIMGILNVTPDSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFRSEVAEACLKLGVDMINDQWAGLYDHRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTAATTAYGIMKGVRAVRVHNVELNAKLAKGIDFLKENENARHNLS
3H2M Chain:B ((39-291))
--KTLIMGILNVTP-----GGSYNEVDAAVRHAKEMRDEGAHIIDIGG---------VSVEEEIKRVVPMIQAVSKEVKLPISIDTYKAEVAKQAIEAGAHIINDIWGAKAEPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVL--DLPVEERLEGTGATVCLGIEKGCEFVRVHDVKEMSRMAKMMDAM-----------
General information:
TITO was launched using:
RESULT:
Template:
3H2M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137476 for 2077 contacts (-66.2/contact) +
2D Compatibility (PS) -26437 + (NN) -19759 + (LL) 932
1D Compatibility (HY) -20000 + (ID) 5300
Total energy: -208040.0 ( -100.16 by residue)
QMean score : 0.698
(partial model without unconserved sides chains):
PDB file :
Tito_3H2M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3H2M-query.scw
PDB file :
Tito_Scwrl_3H2M.pdb
: