Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQNDLVKTLRMNYLFDFYQSL-------------LTNKQRNYLELFYLEDYSLSEIADTFNVSRQAVYDNIRRTGD--LVEDY----EKKLELYQKFEQRREIYDEMKQHL---SNPEQIQRYIQQLEDLE---
3TGN Chain:A ((1-145))
MRQLAKDINAFLNEVILQAENQHEILIGHCTSEVALTNTQEHILMLLSEESLTNSELARRLNVSQAAVTKAIKSLVKEGMLETFYQLTDLARPIAEEHHHHHEHTLLTYEQVATQFTPNEQKVIQRFLTALVGEI
General information:
TITO was launched using:
RESULT:
Template:
3TGN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16832 for 605 contacts (-27.8/contact) +
2D Compatibility (PS) -11818 + (NN) -1420 + (LL) 0
1D Compatibility (HY) -1600 + (ID) 1200
Total energy: -32870.0 ( -54.33 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3TGN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TGN-query.scw
PDB file :
Tito_Scwrl_3TGN.pdb
: