Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPVIKINNLNKVFGDNE----VLKDINLEINQGEVVAIIGPSGSGKSTLLRCMNLLEVPTKGQVIFEG---NDLTEKGTQVDKLRQ-KMGMVFQNFNLFPHKKVVDNIILAPKLLKKD---NNDELHKEALSLLDKVGLKEK-ADVYPNQLSGGQKQRVAIARALAMHPDVILFDEPTSALDPEVVGDVLKVMKDLAKE-GMTMVVVTHEMGFAKDVSDKVIFMADGVVVESGTPVEIFEQPQHERTQNFLARVL
3TIF Chain:B ((1-223))
--MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDD--DELTKIRRDKIGFVFQQFNLIPLLTALENVEL-PLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLKDGEV--------------------------
General information:
TITO was launched using:
RESULT:
Template:
3TIF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145274 for 1685 contacts (-86.2/contact) +
2D Compatibility (PS) -23258 + (NN) -12374 + (LL) 2132
1D Compatibility (HY) -20400 + (ID) 4800
Total energy: -203974.0 ( -121.05 by residue)
QMean score : 0.635
(partial model without unconserved sides chains):
PDB file :
Tito_3TIF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TIF-query.scw
PDB file :
Tito_Scwrl_3TIF.pdb
: