Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINN----KKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
1JW9 Chain:D ((1-81))
MIKVLFFAQVRELVGTDATEVAADFP-TVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFFPPVTGG
General information:
TITO was launched using:
RESULT:
Template:
1JW9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39471 for 468 contacts (-84.3/contact) +
2D Compatibility (PS) -8154 + (NN) 1246 + (LL) 176
1D Compatibility (HY) -6000 + (ID) 1000
Total energy: -53203.0 ( -113.68 by residue)
QMean score : 0.680
(partial model without unconserved sides chains):
PDB file :
Tito_1JW9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JW9-query.scw
PDB file :
Tito_Scwrl_1JW9.pdb
: