Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDVKALKLMTLNDVLSQINGDMTLGIGTGSTMELLLPQMAQLIKERG-YNITGVCTSNKIAFLAKELGIKICEINDVDHIDLAIDGADEVDPSLNIIKGGGGALFREKVIDEMASRFVVVVDETKIVQYLGETFKLPVEVDKFNWYHILRKIESYADIKVERRVN--EDVAFITDNGNYILDCKLPKGIDPYKFHEYLIHLTGVFETGYFLDMADQVIVGTQEGVKILEK
1LK5 Chain:A ((2-228))
--NVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQAKLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVLVDERKLVDYLCQKMPVPIEVIPQAWKAIIEELSIFNAK-AELRMGVNKDGPVITDNGNFIIDAKFPRIDDPLDMEIELNTIPGVIENGIFADIADIVIVGTREGVKKLE-
General information:
TITO was launched using:
RESULT:
Template:
1LK5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -141411 for 1962 contacts (-72.1/contact) +
2D Compatibility (PS) -24419 + (NN) -10298 + (LL) 400
1D Compatibility (HY) -18800 + (ID) 4850
Total energy: -199378.0 ( -101.62 by residue)
QMean score : 0.552
(partial model without unconserved sides chains):
PDB file :
Tito_1LK5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1LK5-query.scw
PDB file :
Tito_Scwrl_1LK5.pdb
: