Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAINIIEYNRSYKEELIEFILSIQK-NEFNIKIDRDDQPDLEN----IEHNYLN-SGGQFWLAINNHQNIVGTIGLIRLD-NNMSALKKMFVDKGYRNLKIGKKLLDKVIMTCKE-QNIDGIYLGTIDKFISAQYFYSNNGFREIKRGDLPSSFPKLDVDNRFYYRNLKD
3OWC Chain:A ((13-177))
-ELQLVPFQLGHFPILQRWFATEKELVQWAGPALR-HPLSLEQMHEDLAESRRRPPLRLLWSACRD-DQVIGHCQLLFDRRNGVVRLARIVLAPSARGQGLGLPMLEALLAEAFADADIERVELNVYDWNAAARHLYRRAGFREEGLRRSATRVGRERWNVVLMGLLR--
General information:
TITO was launched using:
RESULT:
Template:
3OWC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45515 for 1092 contacts (-41.7/contact) +
2D Compatibility (PS) -16600 + (NN) -7894 + (LL) 164
1D Compatibility (HY) -6400 + (ID) 1100
Total energy: -77345.0 ( -70.83 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_3OWC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3OWC-query.scw
PDB file :
Tito_Scwrl_3OWC.pdb
: