Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKQIKALALFSGGLDSLLSMKLLIDQGIEVTALHFNIGFGGNKDKREYFENATAQIGA-KLLVCDIREQFFNDVL----FKPKYGYGKYFNPCIDCHANMFRNAFYKMLELDADFVLSGEVLGQRPKSQRKEALNQVRKLVREVGEEARFDLILDRTQASGEKPQFLDELLLRPMSAKLLEPTFMEKKGWVDREKLLDVSGRGRARQLQMIKDYGLKYYEK-----PGGGCLLTDIQVSNKIKNLKEYREMVFEDGVIVKNGRYFVLPHNARLVVARNEEENHKLDIEHPLMDKIELLGCKGPLSLVDKNASQEDKELAGRIALGYAKTLKNQAYLIQIGNEKRELYPLDKENAREYLFA |
| 1VL2 Chain:A ((2-188)) | --KEKVVLAYSGGLDTSVILKWLCEKGFDVIAYVANVGQK---DDFVAIKEKALKTGASKVYVEDLRREFVTDYIFTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKG--NDQVRF-ELTYAAL----------------------NP---NLKVISPWKDP----------EFLAKFK---------TDLINYAMEKGIPIKVSKKRPYSEDENLMHISHEAGKLEDPAHIPDEDVFTWTVSPKDAPDEETLLEIHFENGIPVKVVNLKDGTEKTDPLELFEYLNEVGAKNGVGRLDMVENRFIGIKSRGVYETPGATILWIAHRDLEGITMDKEVMHLRDML |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VL2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91910 for 1353 contacts (-67.9/contact) +
2D Compatibility (PS) -19023 + (NN) -7871 + (LL) 3576
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -122878.0 ( -90.82 by residue)
QMean score : 0.454
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