Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSITIPIVIAFDNHYAIPAGVSLYSMLACAKSENPKSQNPQLQSDNKKLFYKIHCLVDNLSLENQQKLKETLVPFSAFASVDFLDISTPNLYTTSVEPSVIDKIHEAFLQLNIYAKTRFSKMVMCRLFLA-S------LFPQYDKIIMFDADTLFLNDVSESFFIPLDSYYFG-----AAKDFSSP---KSLKHFQTEREREPRQKFSLYEHYLKEKDMQIICENHYNVGFLIVNLKLWRADKLEEHLLNLTHQKGQCVF-CPEQDLLTLACYQKVLQLPYIYNAHPFMA-NQKRFIPNQQEIIMLHF--YFVGKPWILPTALYSKEWHEILL------KTPFYAEYSVKFLKQMTECL---SLQDKQKTFEFLAPLLNPKTLLEYVFF----RLSKIFKRLKERFLNS |
| 4RAP Chain:A ((10-391)) | --ITPPDTPT----QAGPENI-FYDFNDGARVLLPEGKWHVRLLDADSENILFCCDVDKGWVTSSKKYFVRFRIQVFRQGATPLLDETLKLKDRPVLISFPTGTLGDLLGWFPYAE-RFQSLHKCRLECTMSQDIIDLLAPQYPQIQFSTPDKPRTVAPYATYRVGL---YFGGDTNNQPVDFRKVGFHRSAGYILGVDPREAPVRLDLSAPRVIAAPYVCIATQST------CQAKYWNNGTGWSEVIAHLKSLGYRV-MCIDRD----AHYGQ----GFVWNHIPWGAEDFTGKLPLQERVNLLRHASFFIGLPSGLSWLAWATRIPVVLISGFSLPNSEFYTPWRVFNSHGCYGCWDDTSLNFDHHDFLWCPRHKNTDRQFECTRLITGAQVNGVINKLHRSLT-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RAP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129534 for 2678 contacts (-48.4/contact) +
2D Compatibility (PS) -35829 + (NN) 2572 + (LL) 1932
1D Compatibility (HY) -10800 + (ID) 3650
Total energy: -175309.0 ( -65.46 by residue)
QMean score : 0.192
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