Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -MTNFEKIIAQNRLK-TNAVLTTYCAIFAFIGLLVDAIRINANDLGIALFKLMTFQIFPTITIVMFVVAFVIILVCIQNFSSIML----SGDEYKLID--PSKVLSSKENQIHRLLL---ELLEEAKLHF---EPKLYIINAPYMNAFASGW-DESNSLIALTSALI------ERLDRDELKAVIAHELS---------------HIRHNDIRLTMCVG---------------ILSNIMLLVANFSVYFFMGNRKNSGANLARMIL---WVLQIILPFLTLLLQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYTNNDYKEIDKNSTRSAAYL-FNAEMFSTHPSIKNRIQSLRKRVI |
| 4OCV Chain:A ((24-378)) | TNEALFDVASHFALEGTVDSIEPYGD-----GHINTTYLVTTDGPRYILQRMNT-GIFPDTVNLMRNVELVTSTLKAQGKETLDIVRTTSGDTWAEIDGGAWRVYKFIEHTMSYNLVPNPDVFREAGRAFGDFQNFLSGFDANQLTETIAHFHDTPHRFEDFKKALAADELGRAAGCGPEIEFYLSHADQYAVVMDGLRDGSIPLRVTHNDTKLNNILMDATTGKARAIIDLDTIMPGSMLFDFGDSIRFGASTALEDERDLDKVHFSTELFRAYTEGFVGELRDSITAREAELLPFSGNLLTMECGMRFLADYLE-GDVYFATKYPE--HNLVRSRTQIKLVREMEQRADETRAIVADVMETT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4OCV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -192910 for 2292 contacts (-84.2/contact) +
2D Compatibility (PS) -31774 + (NN) -6867 + (LL) 1484
1D Compatibility (HY) -9600 + (ID) 2800
Total energy: -242467.0 ( -105.79 by residue)
QMean score : 0.281
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