Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEDYAISLEEV---N-FNDFIVVDVRELDEYEELHLPNATLISVN-DQEKLADFLSQHKDQKVLLHCRAGRRALDAAKSMHELGYT-PYYLEGNVYDFEKYGFRMVYDDTSLSDKKN
1YT8 Chain:A ((376-481))
---ADTIDPTTLADWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERL---GTAERYVLTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLLASPRI
General information:
TITO was launched using:
RESULT:
Template:
1YT8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48471 for 765 contacts (-63.4/contact) +
2D Compatibility (PS) -11549 + (NN) -6370 + (LL) 756
1D Compatibility (HY) -2400 + (ID) 800
Total energy: -68834.0 ( -89.98 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1YT8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YT8-query.scw
PDB file :
Tito_Scwrl_1YT8.pdb
: