Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIV---NMMSEKE--IEEDLMAFKSGANKNPVMTAQAKKLSDEDIKALAKYIPTLK
4O1W Chain:E ((13-79))
----------------------------CAACHG------AAGVSAVPTYPNLAGQKEAYLTKQLNDFKSGKRNDPTMKGMVMALSPADMENLAAYYANMK
General information:
TITO was launched using:
RESULT:
Template:
4O1W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5210 for 374 contacts (-13.9/contact) +
2D Compatibility (PS) -6615 + (NN) -2429 + (LL) 3756
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: -15398.0 ( -41.17 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4O1W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4O1W-query.scw
PDB file :
Tito_Scwrl_4O1W.pdb
: