Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLISWNVNGLRACMTKGFMDFFNSVDADVFCIQESKMQQEQNTFEFK---GYFDFWNCAIKKGYSGVVTFTKKEPLSVSYGIDIKEHDKEGRVVTCEFESFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALELKKP----VIVCGDLNVAHNEIDLENPKTNRKNAGFSDEEREKFSELLNAGFIDTFRYFYPNKEKAYTWWSYMQQARDKDIGWRIDYFLCSNPLKTRLKDALIYKDILGSDHCPVGLELV
3W2Y Chain:A ((7-258))
LKIISWNVNGLRAVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLREGFGVERFDTEGRIQIADFDDFLLYNIYFPNGKMSEERLKYKLEF---YDAFLEDVNRERDSGRNVIICGDFNTAHREIDLARPKENSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQ-YTSWSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIE
General information:
TITO was launched using:
RESULT:
Template:
3W2Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -134117 for 2025 contacts (-66.2/contact) +
2D Compatibility (PS) -26665 + (NN) -13316 + (LL) 544
1D Compatibility (HY) -24000 + (ID) 5200
Total energy: -202754.0 ( -100.13 by residue)
QMean score : 0.497
(partial model without unconserved sides chains):
PDB file :
Tito_3W2Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W2Y-query.scw
PDB file :
Tito_Scwrl_3W2Y.pdb
: