Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQ--MVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4MJ8 Chain:B ((6-171))
--SQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVE-DAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKY-----
General information:
TITO was launched using:
RESULT:
Template:
4MJ8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101694 for 1137 contacts (-89.4/contact) +
2D Compatibility (PS) -17437 + (NN) -6340 + (LL) 896
1D Compatibility (HY) -22000 + (ID) 4850
Total energy: -151425.0 ( -133.18 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4MJ8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MJ8-query.scw
PDB file :
Tito_Scwrl_4MJ8.pdb
: