Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKSRKKGIILVLSVILIFSIGLLVNNLMTNNK-DTAKPKKKTVAAVKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVDLETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAALRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGYDLNLVEEKIKEERAKNKDIDYMVVYFHWGVEK-----TNTPVDYQTQYVKKLVDDNLVDAIVASHPHWLQGFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFDQGKVTAHFDPGIISGNQINMLEGSSKTAQLNYLQSISPNATINSNGDISAK |
2DXN Chain:A ((1-271)) | -----------MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPD------AVVVSGD----------IVNCGRPEEYQVARQILG--------------------------------------SLNYPLYLIPGNH----------DDKALFLEYLQPLCPQLGSDANNMRCAV-DDFATRLLFI-------------DSSRAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNH-SLTMTQYRQALISTLPGTVHQ-------------VPYCHEDTDPYYDLSP---ASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2DXN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -10473 for 2166 contacts (-4.8/contact) +
2D Compatibility (PS) -28709 + (NN) -13542 + (LL) 6740
1D Compatibility (HY) -4400 + (ID) 1650
Total energy: -52034.0 ( -24.02 by residue)
QMean score : 0.299
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