Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPVFICEDNRMQRERLTKYIEDYIMVEHFDMKLELSTGDPFELVSRMPTHQGM-GLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAEL--SYMTFTYKVEALDYIIKDDIDL-LHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDILFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTTKGVVKMSNGENCYASSKLIKSLSL
3CU5 Chain:A ((3-124))
-LRILIVDDEKLTRDGLIANINWK----ALSFDQIDQADDGINAIQIAL--KHPPNVLLTDVRM--PRMDGIELVDNILKLYPDCSVIFMSGYSDKEYL--------RAIRYVEKPIDPSEIMDALKQSIQTV-----------------------------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3CU5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -84072 for 810 contacts (-103.8/contact) +
2D Compatibility (PS) -12489 + (NN) -8424 + (LL) 10036
1D Compatibility (HY) -6800 + (ID) 1100
Total energy: -102849.0 ( -126.97 by residue)
QMean score : 0.586
(partial model without unconserved sides chains):
PDB file :
Tito_3CU5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CU5-query.scw
PDB file :
Tito_Scwrl_3CU5.pdb
: