Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKTIEMDGTTYDFTYEDLVWSITFPKSKTRAKELAQLELLEKPATHFTPAKISSDSDSYTISYEIAPRTYGFEQVRKMGREDKLRALRNIADLGELLNTRYTFFLHP-DNLIFDINLVPSIVHRGI-KNILPPYELTEETFFKQYQCFVIAMFSKKFSFENLYNGSLSGARGTQFEK-SILDAKTVQDI-ATILEEAYM-KEHAAVQKNMASVPKKKYSTFR-GLAV-GFIIVAILLAIPVSYFAFVKVPLQNDLLTANENFLKTDYDKVITGLENVDPEKMPQSVQYELAYSYVKG--EKMSDKKKENIMNTISLKSDAKNLLYWIYNGRGEFS-KSL-DIAKLLDDPTLAMYSLTKQIEQVQSDTTLS-GDEKVEKLKTLEESLKEYDEKVNESTTTEDETTNTEAK |
| 4RGL Chain:A ((8-335)) | -----------YQPPYTI---TPAIVNLVAEIGEIIGRYTVLAEQNLTPRLRRENRIRTIQASLAIENNTLTLEQVTAVIDGK--RVLGHPREIQEVRNAFATY--EAMEDWDASVEGDLLAAHELLMRG------LVDET-------------------GRYRSGGVGIFRGEQLVHMA-PPADRVPKLMADLLDWLENTNEHPLVASCIFHYEFEFIHPFADGNGRMGRLWQTLILRNWKPLLAYLPV----------ETVIRDRQEDYYRVLAVADSQ--------ADATPFVEFMLGALRDAVREAVSTDHQVTDQVAALIRAI--GGGELSSNDLMQALGLSHRPTFRNNYLNP-----------AMEDEWIERTQPDSPR----------SPTQRYRLTGKGQR |
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General information:
TITO was launched using:
| RESULT:
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Template: 4RGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -1909 for 2270 contacts (-0.8/contact) +
2D Compatibility (PS) -31428 + (NN) -809 + (LL) 7140
1D Compatibility (HY) -8400 + (ID) 2950
Total energy: -38356.0 ( -16.90 by residue)
QMean score : 0.147
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