Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-LDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRLNLENEHLRRRLSLTDEATPEPKAETEAEHGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGFHVCNVHFGSPRGNDEDCLFCLSLLNKK
2W83 Chain:C ((1-67))
AMDPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKN---------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2W83.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5051 for 260 contacts (19.4/contact) +
2D Compatibility (PS) -7133 + (NN) -2402 + (LL) 3688
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -4496.0 ( -17.29 by residue)
QMean score : 0.411
(partial model without unconserved sides chains):
PDB file :
Tito_2W83.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W83-query.scw
PDB file :
Tito_Scwrl_2W83.pdb
: