Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VIKSQKSFSGTSQGALYLVPTPIGNLEDMTFRAIRMLKEADIIAAEDTRNTVKLLNHFEITTRMTSY---HQFTKENKEDNIIQRMLGGEVVALVSDAGMPSISDPGYELVQSALDANIPVIPLPGANAALTALIASGLAP------QPFYFYGFLPRQNKERTQAIEKLAAREETWILYESPHRLKETLKAIIKI-TGNDRKIVLCRELTKRFEEFLRGTVEDALNWAMDEEIRGEFCLIIEGNSNPQLAEEQLWWQELDIKTHVSTVMEQENVSSKDAIKTVMKARNLPKREVYSAYHEIK |
| 1PJQ Chain:A ((211-448)) | --------PLDHRGEVVLVGAGPGDAGLLTLKGLQQIQQADIVVYD-RLVSDDIMNLVRRDADRVFVGKRHCVPQEEINQILLREAQKGKRVVRLK-GGDPFIFGRGGEELETLCHAGIPFSVVPGITAASGCSAYSGIPLTHRDYAQSVRLVT------G--ELDWENLAAEKQTLVFYMGLNQAATIQEKLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQ--QVESPALIIVGRVVALR------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PJQ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -134443 for 1800 contacts (-74.7/contact) +
2D Compatibility (PS) -24015 + (NN) -13482 + (LL) 6224
1D Compatibility (HY) -9600 + (ID) 2050
Total energy: -177366.0 ( -98.54 by residue)
QMean score : 0.472
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