Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADGKALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAEKGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKAGVEYPTADWTWKDEEAAAKKLTDA-KNKVWGTSQPVTMN-EFYKVAAQNGGSIFNEDL-----TETTINSPENVEALTHLTNEVTDSKVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMFQDAPFKWDV-QVEAGNT-Q-KATHFFANGIGVSKDSDKKEAAFKFASF-MSANEEAAKIRIDNNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEKVLNGDSTPEKALKNSEDNINKTMGFK |
2GHA Chain:A ((3-374)) | ------------------------------PKLTIWCSEK--QVDILQKLGEEFKAKY-GVEVEVQYVNFQDIKSKFLTAAPEGQGADIIVGAHDWVGELAVNGLIEPIPNFSD------LKNFYETALNAFSYGGKLYGIPYAMEAIALIYNKDYVPE----PP---KTMDELIEIAKQIDEEFGGEVRGFITSAAEFYYIAPFIFGYGGYVFKQTEKGLDVNDIGLANEGAIKGVKLLKRLVDEGILDPSDN-Y--QIMDSMFREGQAAMIINGPWAIKAYKDAGIDYGVAPIPDLEPGVPARPFVGVQGFMVNAKSPNKLLAIEFLTSFIAKKET-MYRIYLGDPRLPSRKDVLEL--VKDNP---DVVGFTLSAANGIPMPNVPQMAAVWAAMNDALNLVVNGKATVEEALKNAVERIKAQIQ-- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GHA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60467 for 3187 contacts (-19.0/contact) +
2D Compatibility (PS) -39118 + (NN) -20327 + (LL) 1488
1D Compatibility (HY) -17600 + (ID) 3850
Total energy: -139874.0 ( -43.89 by residue)
QMean score : 0.454
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