Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
3MC1 Chain:A ((84-217))
------------------------------ENKVYDGIEALLSSLKDYGFHLVVATSKPTV---FSKQILEHFKLAFYFDAIVGSSLD----GKLSTKEDVIRYAMESLNIKSDDAIMIGDRE-YDVIGALKNNLPSIGVTYGFGSYEEL--KNAGANYIVN--SVDELHKKILEL-----
General information:
TITO was launched using:
RESULT:
Template:
3MC1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60625 for 1010 contacts (-60.0/contact) +
2D Compatibility (PS) -14109 + (NN) -4765 + (LL) 2544
1D Compatibility (HY) -9600 + (ID) 1300
Total energy: -87855.0 ( -86.99 by residue)
QMean score : 0.512
(partial model without unconserved sides chains):
PDB file :
Tito_3MC1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MC1-query.scw
PDB file :
Tito_Scwrl_3MC1.pdb
: