Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTNTLKTSYQKTPYKLGGNGPRNVGVLTEALQNIDDNLESDIYGNGAVIEDFETKIAKILGKQSAVFF-PSGTMAQQIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQITPLLLGT-ANQLLTIDDIKSL-------REPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALF--DSVYVSFYKGIGGIAGAILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSN--MFHVYFENSADEIGAILTKIQDETGVGISGYLQEKSADVCAFEVSVGDAFAEIPAKNLELVFRCLEKEL |
1V72 Chain:A ((6-350)) | ---------RPPALGFSSDNIAGASPEVAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPP--WGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFLSAQIDAYLTD--DLWLRNARKANAAAQRLAQ--GLEGLGGVEVLGGTEANILFCRLDSAMIDALLK------AGFGFYHDRWGPNVVRFVTSFAT-----TAEDVDHLLNQVRLAA |
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General information:
TITO was launched using:
| RESULT:
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Template: 1V72.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -162582 for 2930 contacts (-55.5/contact) +
2D Compatibility (PS) -36024 + (NN) -13736 + (LL) 2048
1D Compatibility (HY) -6800 + (ID) 2900
Total energy: -219994.0 ( -75.08 by residue)
QMean score : 0.478
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