Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFNWYKKYREEKRDYKQYKKRIAA--LPEDYKTAMKAIETYLWNFAK----GAGMFEILKNVLEMFENAAA-DNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKLRDSIK
1VYI Chain:A ((1-111))
---WSATNEEDDLSVEAEIAHQIAESFSKKYKFPSRSSGIFLYNFEQLKMNLDDIVKEAKNVPGVTRLAHDGSKIPLRCVLGWVALANSKKFQLLVEADKLSKIMQDDLNRYTS
General information:
TITO was launched using:
RESULT:
Template:
1VYI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1323 for 721 contacts (-1.8/contact) +
2D Compatibility (PS) -11086 + (NN) -2892 + (LL) 260
1D Compatibility (HY) -2000 + (ID) 800
Total energy: -17841.0 ( -24.74 by residue)
QMean score : 0.311
(partial model without unconserved sides chains):
PDB file :
Tito_1VYI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VYI-query.scw
PDB file :
Tito_Scwrl_1VYI.pdb
: