Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MVFPKKLVASIAVFISLGFIYFRVSTAVA-----FENTSSASLLPSTGDAFSVWPIVI-GVVL-----VALAVVLFIKKKI
1BML Chain:C ((285-372))
DPFDRSHLKLFTIKYVDVNTNELLKSEQLLTASERNLDFRDLYDPRDKAKLLYNNLDAFGIMDYTLTGKVEDNHDDTNRIITVYMGKR-
General information:
TITO was launched using:
RESULT:
Template:
1BML.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47946 for 397 contacts (-120.8/contact) +
2D Compatibility (PS) -7368 + (NN) 2715 + (LL) 204
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -55045.0 ( -138.65 by residue)
QMean score : 0.152
(partial model without unconserved sides chains):
PDB file :
Tito_1BML.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BML-query.scw
PDB file :
Tito_Scwrl_1BML.pdb
: