Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINYKDGLAVLPDGKIVSEYPFIPGIDASGVVVNSK--SDQFQVGDEVIVTSYD-F------------------------------------------GVSYFGGYSEFIRVPAEWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPNAGKIAVSGATGGVGSLSSAILSKRGF-SVVASSGKSDAKEFLEKFGVSEIVSREA----FQPEKVRALDKQLYAGAIDCVGG-KPLSYLLTAVQYG-GAVTTCGMSAGGK-LDTTVFPFILRGIQLFGIDSVLC-PMSKRERIWNRLA-TDYKLTNLESLATEIAFSELPESLHQVMNGGVTGRYLVKVK |
| 3UKO Chain:A ((6-377)) | VITCKAAVAYEPNKP--LVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPE-GLFPCILGHEAAGIVESVGEGVTEVQAGDHVIPCYQAECRECKFCKSGKTNLCGKVRSATGVGIMMNDRKSRFSVNGKPIYHFMGTSTFSQYTVVHDVSVAKIDPTAPLDKVCLLGCGVPTGLGAVWNTAK--VEPG-SNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLT-DGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQ-LVTGRVWKGTAFGGFKSRTQVPWLVEKYMNKEIKVDEY--ITHNLTLGEINKAFDLLHEGT-CLRCVLDTS |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UKO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -197761 for 2892 contacts (-68.4/contact) +
2D Compatibility (PS) -33720 + (NN) -4170 + (LL) 536
1D Compatibility (HY) -13200 + (ID) 3000
Total energy: -251315.0 ( -86.90 by residue)
QMean score : 0.545
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