Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTMDDIVREGHPALREVATEVTFP--LSDEEKKLGRDMLEFLINSQDEDLAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKD-----RLYSYVLYNPKIRSHSVQQACLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNGIMFYDHINKENPSYLPPDVDVFG
1SV2 Chain:A ((5-158))
------ILRMGDPILRKISEPVTEDEIQTKEFKKLIRDMFDTMRHAE------------GVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNPVITPLTKDTSGF--WEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLK---------------
General information:
TITO was launched using:
RESULT:
Template:
1SV2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -71938 for 1105 contacts (-65.1/contact) +
2D Compatibility (PS) -15857 + (NN) -5818 + (LL) 956
1D Compatibility (HY) -13200 + (ID) 2700
Total energy: -108557.0 ( -98.24 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_1SV2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SV2-query.scw
PDB file :
Tito_Scwrl_1SV2.pdb
: