Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAYPIKYIENNLVFNNDGECFAYYELIPYNYSFLSPDEKYQVHDNFRQLVAQSRDGKIHALQLATESSIRATQERSKLEVKGRLKEVAHRKIDEQTEALVSMIGDNQVDYRFFIGFKLLLNEQELSIQSVSQEIKKAVQEFLNGVNHKLMGDFVSMSNAEIDRFSKMENLLESKISRRFKIRKLDKNDFGYIIEHIYGQTGTPYEEYEYHLPKKYQDKEVLVKKYDILKPTRCLIDESQRYLKIIHEDETTYVAYFTINSIVGELDFPSSEIFYYQQQQFTFPIDTSMNVEIVANKKALTTVRNKKKELKDLDSHAWESDNETSNNVIDALDSVNELETTLDQSKESMYKLSYVVRVSAKDLDELKRRCDEVKDFYDDLSI-KLVRPFGDMLGLHGEFIPASKRYINDYIQYVTSDFLAGLGFG----------ATQTLGEHEGIYVGYNLDTGKNVYLKPALASQGVKGSVTNA---LASAFIGSLGGGKSFSNNMLVYYAVLFGGQAVIVDPKAERG----------KWKETLPEIAHEINIVNLTSDDENKGLLDPYVILSRKKD-----SESLAIDILTFLTGISSRDS--DKFPVL-RKAIRNVTQSEQRGL--LLVIDELRKEDTSISNSIADHIESFVDYDFAHLLFS--DGNVTQSISLEKQLNIIQVADLVLPDADTSFEEYTTMELLSVAMLIVISTFALDFIHTDRSIFKIVDLDEAWSFLQ----VAQGKTLSMKLVRAGRAMNAGVYFVTQNADDL-LDEKMKNNIGLKFAFRSTDLVEIKKTLTFFGVDPEDENNQKRLRELENGQCLISDLYGRVGVMQFHPIFEELLQAFDTRPPIRNEVE |
4U6D Chain:A ((28-409)) | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EGFPFILPKEKPNRPLSAAMQRNYDNYMAPRPENNELYTQFKYTELKGFDYNGHDGTISRRDPSKVIYENGKYYVWYTYRNTPT----PPQGAKNSNDTIPSADWDLAEIWYATSKDGFTWEEQ----------GVAVPRPPKPNVGWRSVTTTDILKWKGKFYLYYQGFMEASGTRGD------DCPVAVSYADSPDGPWTPHTEVVIPNGKKGEWDQYSIHDPYPIVYKDKIYLYYKSDFDGDPNLVRMQGLAIADNPLGPFKKSPLNPVINSGHETTLFPFKEGMAALVIRDGTEHNTVQYAE-----DGVNFNIASIVEFMPNAAGPYVADAFTNTKYGRGISWGISHFTNATTWDQNHAVLARFDCDLSLDVDDPHMKRLGTYFKPEFYYQMGLSKKQRERI------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4U6D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -29938 for 2519 contacts (-11.9/contact) +
2D Compatibility (PS) -35432 + (NN) 4801 + (LL) 35268
1D Compatibility (HY) -4000 + (ID) 3200
Total energy: -32501.0 ( -12.90 by residue)
QMean score : 0.111
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