Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVETKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVVDLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLAATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAELIALGKKGISELIEIQKETLGDKVTARIKGE
1UDN Chain:A ((2-247))
-RSDGRKEDQLRPVSIQRDFLEYPEGSCLISFGKTKVICTASVIENVPNWLKGKGQGWITAEYSMLPRATQQRTIRESVQGRIGGRTHEIQRMIGRAMRTAVELTKIGERTIWVDCDVIQADGGTRTAAITGAFVAVADAIIKLHKEGIIEETPIKDFVAAVSVGIVN-DRILLDLNFEEDSAAQVDMNVVGTGSGRLSEVHTMGEEYSFTKDELIKMLDLAQKGINELIELQKKLYVIQDGKWERSE
General information:
TITO was launched using:
RESULT:
Template:
1UDN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130763 for 2058 contacts (-63.5/contact) +
2D Compatibility (PS) -26658 + (NN) -10345 + (LL) 312
1D Compatibility (HY) -22000 + (ID) 6750
Total energy: -196204.0 ( -95.34 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_1UDN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDN-query.scw
PDB file :
Tito_Scwrl_1UDN.pdb
: