Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKHKVGILGGTFDPPHLAHLHMAEEAKKQLELEKILFLPNKIPPHKHISGMASINERVEMLQLMIEGIDSFEIDTRELMRTGKSYTYDTMRDMIIEQ-PDTDFYFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPLY-----QPEV-----------PYD--------VVKIDMPKTTISSTEIRNDIEHAEA---FLPEKVWSYIKEHQLYGKK
1K4M Chain:C ((1-212))
MKSLQALFGGTFDPVHYGHLKPVETLANLIGLTRVTIIPNNVPPHRPQPEANSV-QRKHMLELAIADKPLFTLDERELKRNAPSYTAQTLKEWRQEQGPDVPLAFIIGQDSLLTFPTWYEYETILDNAHLIVCRRPGYPLEMAQPQYQQWLEDHLTHNPEDLHLQPAGKIYLAETPWFNISATIIRERLQNGESCEDLLPEPVLTYINQQGLY---
General information:
TITO was launched using:
RESULT:
Template:
1K4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -125941 for 1401 contacts (-89.9/contact) +
2D Compatibility (PS) -19529 + (NN) -3206 + (LL) -124
1D Compatibility (HY) -12400 + (ID) 3400
Total energy: -164600.0 ( -117.49 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_1K4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1K4M-query.scw
PDB file :
Tito_Scwrl_1K4M.pdb
: