Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTKRILMLEDGNYFIGDAIGSEKETIGEVVFNTGMTGYQETITDPSYYGQIITFTYPLVGNYGVNRD--------DFESINPAVKGVVVREAAEFASNWRNQITLNEFLKEKGIPGIAGIDTRKL-TKLIRKEGTLKGILAAETADKEELLHHLRSVRLPVDQVHEVSSAKAFASPGDGKRVVLVDYGV-----KSSILRELNK----RNCYVTVVPYNTSA-E----EIL--AMHPDGVMLSNGPGDPKDVPEALEMIRGIQ-GKLPLFGICLGHQLFALANGADTFKLKFG-----------------------------HRGANHPVKELAT-------G-RVDFTAQNHGYAVEKDSLI---GTDLKVTHIELNDETVEGLAHKEYPA-YTVQYHPEANPGPSDVNYLFDEFMEMMNGKEEGELHA |
| 3NVA Chain:A ((180-534)) | --------------------------------------------------------EYLSVTGELKTKPLQHSVQELRRIGIQPDFIVGRATLPLDDETRRKIALFTNVKVDHIVSSYDVETSYEVPIILESQKLVSKILSRLKLEDRQ--VDLTDW---ISFVNNIKGIN----SKKTINIALVGKYTKLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSRGAEG-KIKAIKYAREHNIPFLGICFGFQLSIVEFARDVLGLSEANSTEINPNTKDPVITLLDEQKNVTQLGGTMRLGAQKIILKEGTIAYQLYGKKVVYERHRHRYEVNPKYVDILEDAGLVVSGIS-ENGLVEIIELPSNKFFVATQAHPEFKSRPTNPSPIYLGFIRAVAS-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NVA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -48740 for 2076 contacts (-23.5/contact) +
2D Compatibility (PS) -30875 + (NN) -10291 + (LL) 5132
1D Compatibility (HY) -14000 + (ID) 2450
Total energy: -101224.0 ( -48.76 by residue)
QMean score : 0.284
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