Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | -----MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDV----------PGVTRDRIYNSAEWLGKEFNIIDTGGIDLSDEPFLEQI----RAQAEIAIDEAD------------VIIFITNGREGVTDADEQVAKILYRSNKPIVLAINK------VDNPEMRDQIYDFYS-----LGFGEPYPI-SGSHGLGLGDMLDAVRAHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTYTFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDKRIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQRLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKPPTFVVFVNDPELMHFSYERFLENRIREAFP--FEGTPIRVIARKRK |
| 1XZP Chain:A ((27-482)) | SSVDKLMDTIVAVATPPGKGAIAIL-RLSGPDSWKIVQKHLRTRSKIVPRKAIHGWIHENGEDVDEVVVVFYKSPKSYTGEDMVEVMCHGGPLVVKKLLDLFLKSGARMAEPGEFTKRAFLNGKMDLTSAEAVRDLIEAKSETSLKLSLRNLKGGLRDFVDSLRRELIEVLAEIRVELDYPDEIETNTGEVVTRLERIKEKLTEELKKADAGILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETN--DLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILERIKN--KRYLVVINKVDVVEKIN------EEEIKNKLG--TDRHMVKISALKGEGLEKLEESIYRETQEIFERGSDSLITN--LRQKQLLENVKGHLEDAIKSLKEGMPVDMASIDLERALNLLDEVTGRSFREDLLDTIFSNFCVGK---------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1XZP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -91001 for 3077 contacts (-29.6/contact) +
2D Compatibility (PS) -44102 + (NN) -7166 + (LL) 2500
1D Compatibility (HY) -20800 + (ID) 4350
Total energy: -164919.0 ( -53.60 by residue)
QMean score : 0.328
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