Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPSDIRAAGGVARMADPRIVEEVMKAVSIPVMAKARIGHITEARVLEAMGVDYIDESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVEAVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVATPADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPMKGIEMSRLNPEDRMQDRSF
4WY0 Chain:I ((26-282))
----------------MQKGGVIMDVVNAEQAKIAEAAGAVAVMALER--------GGVARMADPTVIEEVMNAVSIPVMA-VRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTHYEDYELIAHLSKGLG----------------------
General information:
TITO was launched using:
RESULT:
Template:
4WY0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -179017 for 2130 contacts (-84.0/contact) +
2D Compatibility (PS) -27442 + (NN) -15895 + (LL) 2856
1D Compatibility (HY) -31200 + (ID) 9950
Total energy: -260648.0 ( -122.37 by residue)
QMean score : 0.674
(partial model without unconserved sides chains):
PDB file :
Tito_4WY0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4WY0-query.scw
PDB file :
Tito_Scwrl_4WY0.pdb
: