Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VEIKQIKAKDTQDIRHRVLRPEQ-----PEENA---IYPN-D--------DMEGTFHLGAFEKDVLLGVASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLAEGEAEIWTRGADIIWCNARIVAVGFYEKHGYRKVGKSFV-IPGIG-EHYLMKKVNPNKKVDQDN
2FIW Chain:A ((8-160))
PALRPYLPEDAAVTAAIFVASIEQLTADDYSEEQQEAWASAADDEAKFAARLSGQLTLIATLQGVPVGFASLKG----------PDHIDMLYVHPDYVGRDVGTTLIDALEKLAGARGALILTVDASDNAAEFFAKRGYVAKQRNTVSINGEWLANTTMTKSL---------
General information:
TITO was launched using:
RESULT:
Template:
2FIW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34233 for 977 contacts (-35.0/contact) +
2D Compatibility (PS) -14158 + (NN) -2060 + (LL) 708
1D Compatibility (HY) -2800 + (ID) 1400
Total energy: -53943.0 ( -55.21 by residue)
QMean score : 0.357
(partial model without unconserved sides chains):
PDB file :
Tito_2FIW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2FIW-query.scw
PDB file :
Tito_Scwrl_2FIW.pdb
: