Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKILLVCAAGMSTSL-LVTKMKAHATSIGEEIEIEALPVSEASNVVDKMDIVMLGPQVRYQKPQVD-ELVQGRIPVIVIDMKDYGMLNGKAVLEKA-FAEIG--
2R4Q Chain:A ((170-273))
-AKILAVTACPTGHTFMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVEMERFKGK-RVLQVPVTA-GIRRPQELIEKAMNQDAPIY
General information:
TITO was launched using:
RESULT:
Template:
2R4Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21277 for 758 contacts (-28.1/contact) +
2D Compatibility (PS) -9889 + (NN) 248 + (LL) 504
1D Compatibility (HY) 2400 + (ID) 850
Total energy: -28864.0 ( -38.08 by residue)
QMean score : 0.327
(partial model without unconserved sides chains):
PDB file :
Tito_2R4Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2R4Q-query.scw
PDB file :
Tito_Scwrl_2R4Q.pdb
: