Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MTENEQLFWNRVLELSRSQIAPAAYEFFVLEARLLKIEHQTAVITLDNIEMKKLFWEQNLGPVILTAGFEIFNAEITANYVSNDLHLQETSFSNYQQSSNEVNTLPIRKIDSNLKEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKF--RNLDLLLIDDIQSLAKKTLG----GTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKIQEYPYDFPQDTIEYLAGEFDSNVR-ELEGALKNISLVADFKHAKTITVDIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKIR |
| 3VFD Chain:A ((147-334)) | -------------------------------------------------------------------------------------------------------------------------------------------------PARGLLLFGPPGNGKTMLAKAVAAES-----NATFFNISAASL-------GEK-LVRALFAVARELQPSIIFIDQVDSLL-----DASRRLKTEFLIEFDGVQ---RVLVMGATNRPQE---LDEAVLRRFIK--RVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPENMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VFD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -75028 for 1149 contacts (-65.3/contact) +
2D Compatibility (PS) -17386 + (NN) -13115 + (LL) 19340
1D Compatibility (HY) -8400 + (ID) 2050
Total energy: -96639.0 ( -84.11 by residue)
QMean score : 0.581
|
|
|