Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHA--SKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQETNSDLF----KLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGL-DYEILTNIFEVQLLERFGVALNFHDCVFCHRVGLPFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVK-PEMKLKIRQFLDMIYDEYV-GIHLKSKKFIDDLSSWGSIMKSD
3Q8D Chain:A ((2-232))--EGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRSTLKGALQPFT--PLLLRFGGRG-----EVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEYETRFSELFFDYLHCIQSLAGVTGTPEPALRRFELALLGHLGY-------------GVNFTHCAGSGEPVDDTMTYRYREEKGFIASVVIDNKTFTGRQLKALNAREFPDADTLRAAKRFTRMALKPYLGGKPLKSRELFRQFM---------


General information:
TITO was launched using:
RESULT:

Template: 3Q8D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117049 for 1647 contacts (-71.1/contact) +
2D Compatibility (PS) -23557 + (NN) -4271 + (LL) 2436
1D Compatibility (HY) -9600 + (ID) 2200
Total energy: -154241.0 ( -93.65 by residue)
QMean score : 0.400

(partial model without unconserved sides chains):
PDB file : Tito_3Q8D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3Q8D-query.scw
PDB file : Tito_Scwrl_3Q8D.pdb: