Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKKALFTGSFDPVTNGHLDIIERASYLFDHVYIGLFYNLEKQGYFSIECRKKMLEEAIRQFKNVSVLVAQDRLAVDLAREVGAKYFVRGLRNSQDFDYEANLEFFNKQLADDIETVYLSTSPSLSPISSSRIRELIYFKASVKPFVPKSVVREV-EKMSEE
1VLH Chain:B ((14-170))
---KAVYPGSFDPITLGHVDIIKRALSIFDELVVLVTENPRKKCMFTLEERKKLIEEVLSDLDGVKVDVHHG-LLVDYLKKHGIKVLVRGLRAVTDYEYELQMALANKKLYSDLETVFLIASEKFSFISSSLVKEVALYGGDVTEWVPPEVARALNEKLKE-
General information:
TITO was launched using:
RESULT:
Template:
1VLH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108895 for 1211 contacts (-89.9/contact) +
2D Compatibility (PS) -16990 + (NN) -8603 + (LL) 528
1D Compatibility (HY) -16400 + (ID) 3250
Total energy: -153610.0 ( -126.85 by residue)
QMean score : 0.457
(partial model without unconserved sides chains):
PDB file :
Tito_1VLH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VLH-query.scw
PDB file :
Tito_Scwrl_1VLH.pdb
: