Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKGLMISFEGPDGAGKTTVLEAVLPLLREKLSQDILTTREPGGVTISEEIRHIILDVKHTQMDKKTELLLYMAARRQHLVEKVLPALEEGKIVLMDRFIDSSVAYQGSGRGLDKSHIKWLNDYATDSHKPDLTLYFDVPSEVGLERIQKSVQREVNRLDLEQLDMHQRVRQGYLELADSEPNRIVTIDASQQLDEVIA---ETFSIILDRINQ
3UWO Chain:A ((11-215))
---GLFVTLEGPEGAGKSTNRDYLAERLRER-GIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPV-------------RLDRFEQEDRRFFEAVRQTYLQRAAQAPERYQVLDAGLPLAEVQAGLDRLLPNLLER---
General information:
TITO was launched using:
RESULT:
Template:
3UWO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -67325 for 1453 contacts (-46.3/contact) +
2D Compatibility (PS) -20983 + (NN) -11731 + (LL) 2032
1D Compatibility (HY) -13200 + (ID) 4050
Total energy: -115257.0 ( -79.32 by residue)
QMean score : 0.603
(partial model without unconserved sides chains):
PDB file :
Tito_3UWO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UWO-query.scw
PDB file :
Tito_Scwrl_3UWO.pdb
: