Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYDVVIPAAGQGKRMKAGRNKLFIELKGDPVIIHTLRVFDSHRQCDKIILVINEQEREHFQQLLSDYPFQTSIELVAGGDERQHSVYKGLKAVK---------QEKIVLVHDGARPFIKHEQIDELIAEAEQTGAAILAVPVKDTIKRVQ-DLQVSETIERSSLWAVQTPQAFRLSLLMKAHAEAERKG-FLGTDDASLVEQM-EGGSVRVVEGSYTNIKLTTPDDLTSAEAIMESESGNKHV
4CVH Chain:A ((5-254))
QAVAAVLPAG--------PTPKQFCPILERPLISYTLQALERVCWIKDIVVAVTGENMEVMKSIIQKYQHKR-ISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCC-TKAKLVEGSPDLWKVTYKRDLYAAESIIKERIS----
General information:
TITO was launched using:
RESULT:
Template:
4CVH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133823 for 1747 contacts (-76.6/contact) +
2D Compatibility (PS) -23748 + (NN) -9366 + (LL) 376
1D Compatibility (HY) -14000 + (ID) 2850
Total energy: -183411.0 ( -104.99 by residue)
QMean score : 0.555
(partial model without unconserved sides chains):
PDB file :
Tito_4CVH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CVH-query.scw
PDB file :
Tito_Scwrl_4CVH.pdb
: